Raw Data has added a secondary panel inside the game where players can go in and add time which is why the game says time is up even though there is still time in Springboard.
There is a way to disable it. When you have Raw Data running, click "o" on your keyboard. This will bring up a panel with different options. Navigate to the advanced settings and from there you should be able to turn off the in game timer.
At this time when you change the settings, it doesn't save the changes permanently. You will have to go in every time and make this change. We are working with Survios to come up with a better solution.